Get alpha diversity

Source: R/diversities.R

Get alpha diversity

diversities(counts_table, index = "all", zeroes = TRUE)

Arguments

counts_table

A dataframe with organism x sample
index

One of inverse_simpson,gini_simpson,shannon,fisher,coverage,unit
zeroes

A boolean for whether to ignore zero values

Value

A list of alpha diversity

Examples

diversities(matrix(seq_len(12), nrow = 3),index="shannon")

#> [1] 1.011404 1.085189 1.093390 1.095854