Modify organisms of multi-assay experiment object

Source: R/utils.R

Modify organisms of multi-assay experiment object

mae_pick_organisms(MAE, isolate_organisms = NULL, discard_organisms = NULL)

Arguments

MAE

A multi-assay experiment object
isolate_organisms

Isolate specific organisms e.g. ti|001, ti|002
discard_organisms

Discard specific organisms e.g. ti|001, ti|002

Value

A multi-assay experiment object

Examples

data_dir = system.file('extdata/MAE.rds', package = 'animalcules')
toy_data <- readRDS(data_dir)
subset <- mae_pick_organisms(toy_data, 
isolate_organisms=c('ti|001', 'ti|002'))