#> --------------------------------------------------------------------
#> Starting Celda_CG: Clustering cells and genes.
#> --------------------------------------------------------------------
#> Thu Sep 06 12:57:48 2018 .. Initializing chain 1 with 'random' (seed=12345)
#> Thu Sep 06 12:57:48 2018 .... Completed iteration: 1 | logLik: -1292432.99348905
#> Thu Sep 06 12:57:48 2018 .... Completed iteration: 2 | logLik: -1271152.8119707
#> Thu Sep 06 12:57:48 2018 .... Completed iteration: 3 | logLik: -1271146.08792976
#> Thu Sep 06 12:57:48 2018 .... Completed iteration: 4 | logLik: -1271142.13405322
#> Thu Sep 06 12:57:48 2018 .... Completed iteration: 5 | logLik: -1271138.7926281
#> Thu Sep 06 12:57:48 2018 .... Completed iteration: 6 | logLik: -1271139.37518801
#> Thu Sep 06 12:57:48 2018 .... Completed iteration: 7 | logLik: -1271135.02027059
#> Thu Sep 06 12:57:48 2018 .... Completed iteration: 8 | logLik: -1271133.69255723
#> Thu Sep 06 12:57:48 2018 .... Completed iteration: 9 | logLik: -1271131.24555386
#> Thu Sep 06 12:57:48 2018 .... Determining if any cell clusters should be split.
#> Thu Sep 06 12:57:49 2018 .... Cluster 1 was reassigned and cluster 3 was split in two.
#> Thu Sep 06 12:57:49 2018 .... Determining if any gene clusters should be split.
#> Thu Sep 06 12:57:49 2018 .... No additional splitting was performed.
#> Thu Sep 06 12:57:49 2018 .... Completed iteration: 10 | logLik: -1265977.81160925
#> Thu Sep 06 12:57:49 2018 .... Completed iteration: 11 | logLik: -1265977.81160925
#> Thu Sep 06 12:57:49 2018 .... Completed iteration: 12 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:49 2018 .... Completed iteration: 13 | logLik: -1265977.81160925
#> Thu Sep 06 12:57:49 2018 .... Completed iteration: 14 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:49 2018 .... Completed iteration: 15 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:49 2018 .... Completed iteration: 16 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:49 2018 .... Completed iteration: 17 | logLik: -1265977.81160925
#> Thu Sep 06 12:57:49 2018 .... Completed iteration: 18 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:49 2018 .... Completed iteration: 19 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:49 2018 .... Determining if any cell clusters should be split.
#> Thu Sep 06 12:57:49 2018 .... No additional splitting was performed.
#> Thu Sep 06 12:57:49 2018 .... Completed iteration: 20 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:50 2018 .... Completed iteration: 21 | logLik: -1265977.81160925
#> Thu Sep 06 12:57:50 2018 .... Determining if any cell clusters should be split.
#> Thu Sep 06 12:57:50 2018 .... No additional splitting was performed.
#> Thu Sep 06 12:57:50 2018 .... Determining if any gene clusters should be split.
#> Thu Sep 06 12:57:50 2018 .... No additional splitting was performed.
#> Thu Sep 06 12:57:50 2018 .... Completed iteration: 22 | logLik: -1265977.81160925
#> Thu Sep 06 12:57:50 2018 .. Finished chain 1 with seed 12345
#> Thu Sep 06 12:57:50 2018 .. Initializing chain 2 with 'random' (seed=12346)
#> Thu Sep 06 12:57:50 2018 .... Completed iteration: 1 | logLik: -1296147.64459921
#> Thu Sep 06 12:57:50 2018 .... Completed iteration: 2 | logLik: -1273614.61367925
#> Thu Sep 06 12:57:50 2018 .... Completed iteration: 3 | logLik: -1271640.01823375
#> Thu Sep 06 12:57:50 2018 .... Completed iteration: 4 | logLik: -1271150.85741638
#> Thu Sep 06 12:57:50 2018 .... Completed iteration: 5 | logLik: -1270826.33540845
#> Thu Sep 06 12:57:50 2018 .... Completed iteration: 6 | logLik: -1268220.93677393
#> Thu Sep 06 12:57:50 2018 .... Completed iteration: 7 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:50 2018 .... Completed iteration: 8 | logLik: -1265977.81160925
#> Thu Sep 06 12:57:50 2018 .... Completed iteration: 9 | logLik: -1265981.10028326
#> Thu Sep 06 12:57:50 2018 .... Determining if any cell clusters should be split.
#> Thu Sep 06 12:57:51 2018 .... No additional splitting was performed.
#> Thu Sep 06 12:57:51 2018 .... Determining if any gene clusters should be split.
#> Thu Sep 06 12:57:51 2018 .... No additional splitting was performed.
#> Thu Sep 06 12:57:51 2018 .... Completed iteration: 10 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:51 2018 .... Completed iteration: 11 | logLik: -1265977.81160925
#> Thu Sep 06 12:57:51 2018 .... Completed iteration: 12 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:51 2018 .... Completed iteration: 13 | logLik: -1265977.81160925
#> Thu Sep 06 12:57:51 2018 .... Completed iteration: 14 | logLik: -1265977.81160925
#> Thu Sep 06 12:57:51 2018 .... Completed iteration: 15 | logLik: -1265977.81160925
#> Thu Sep 06 12:57:51 2018 .... Completed iteration: 16 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:51 2018 .... Determining if any cell clusters should be split.
#> Thu Sep 06 12:57:51 2018 .... No additional splitting was performed.
#> Thu Sep 06 12:57:51 2018 .... Determining if any gene clusters should be split.
#> Thu Sep 06 12:57:51 2018 .... No additional splitting was performed.
#> Thu Sep 06 12:57:51 2018 .... Completed iteration: 17 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:51 2018 .. Finished chain 2 with seed 12346
#> Thu Sep 06 12:57:51 2018 .. Initializing chain 3 with 'random' (seed=12347)
#> Thu Sep 06 12:57:51 2018 .... Completed iteration: 1 | logLik: -1298276.1895605
#> Thu Sep 06 12:57:51 2018 .... Completed iteration: 2 | logLik: -1270053.97340606
#> Thu Sep 06 12:57:51 2018 .... Completed iteration: 3 | logLik: -1266751.51933782
#> Thu Sep 06 12:57:51 2018 .... Completed iteration: 4 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:51 2018 .... Completed iteration: 5 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:51 2018 .... Completed iteration: 6 | logLik: -1265977.81160925
#> Thu Sep 06 12:57:51 2018 .... Completed iteration: 7 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:52 2018 .... Completed iteration: 8 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:52 2018 .... Completed iteration: 9 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:52 2018 .... Determining if any cell clusters should be split.
#> Thu Sep 06 12:57:52 2018 .... No additional splitting was performed.
#> Thu Sep 06 12:57:52 2018 .... Determining if any gene clusters should be split.
#> Thu Sep 06 12:57:52 2018 .... No additional splitting was performed.
#> Thu Sep 06 12:57:52 2018 .... Completed iteration: 10 | logLik: -1265977.42998371
#> Thu Sep 06 12:57:52 2018 .... Completed iteration: 11 | logLik: -1265977.81160925
#> Thu Sep 06 12:57:52 2018 .... Completed iteration: 12 | logLik: -1265977.81160925
#> Thu Sep 06 12:57:52 2018 .... Completed iteration: 13 | logLik: -1265977.81160925
#> Thu Sep 06 12:57:52 2018 .... Determining if any cell clusters should be split.
#> Thu Sep 06 12:57:52 2018 .... No additional splitting was performed.
#> Thu Sep 06 12:57:52 2018 .... Determining if any gene clusters should be split.
#> Thu Sep 06 12:57:53 2018 .... No additional splitting was performed.
#> Thu Sep 06 12:57:53 2018 .... Completed iteration: 14 | logLik: -1265977.81160925
#> Thu Sep 06 12:57:53 2018 .. Finished chain 3 with seed 12347
#> --------------------------------------------------------------------
#> Completed Celda_CG. Total time: 4.258558 secs
#> --------------------------------------------------------------------
#> Error in parse(text = x): <text>:1:11: unexpected numeric constant
#> 1: Dimension 2
#> ^