Finds the effect sizes for all genes in the original dataset, regardless of significance. — calcEffectSizes • singleCellTK

Finds the effect sizes for all genes in the original dataset, regardless of significance.

calcEffectSizes(countMatrix, condition)

Arguments

countMatrix: Matrix. A simulated counts matrix, sans labels.
condition: Factor. The condition labels for the simulated cells. If more than 2 conditions are given, the first will be compared to all others by default.

Value

A vector of cohen's d effect sizes for each gene.

Examples

data("mouseBrainSubsetSCE")
res <- calcEffectSizes(assay(mouseBrainSubsetSCE, "counts"),
                       condition = colData(mouseBrainSubsetSCE)[, "level1class"])