Finds the effect sizes for all genes in the original dataset, regardless of significance.

calcEffectSizes(countMatrix, condition)

Arguments

countMatrix

Matrix. A simulated counts matrix, sans labels.

condition

Factor. The condition labels for the simulated cells. If more than 2 conditions are given, the first will be compared to all others by default.

Value

A vector of cohen's d effect sizes for each gene.

Examples

data("mouseBrainSubsetSCE") res <- calcEffectSizes(assay(mouseBrainSubsetSCE, "counts"), condition = colData(mouseBrainSubsetSCE)[, "level1class"])