Given a list of genes and a SCtkExperiment object, return the binary or continuous expression of the genes.

getBiomarker(inSCE, gene, binary = "Binary", useAssay = "counts")

Arguments

inSCE

Input SCtkExperiment object. Required

gene

gene list

binary

"Binary" for binary expression or "Continuous" for a gradient. Default: "Binary"

useAssay

Indicate which assay to use. The default is "counts".

Value

getBiomarker(): A data.frame of expression values

Examples

getBiomarker(mouseBrainSubsetSCE, gene="C1qa")
#> sample C1qa #> X1772063061_G11 X1772063061_G11 FALSE #> X1772067064_C10 X1772067064_C10 FALSE #> X1772062113_D09 X1772062113_D09 FALSE #> X1772062111_A12 X1772062111_A12 FALSE #> X1772071040_C12 X1772071040_C12 FALSE #> X1772062111_D09 X1772062111_D09 FALSE #> X1772071036_G02 X1772071036_G02 FALSE #> X1772071040_D04 X1772071040_D04 FALSE #> X1772058177_E12 X1772058177_E12 FALSE #> X1772066070_G10 X1772066070_G10 FALSE #> X1772063074_G10 X1772063074_G10 FALSE #> X1772062115_E07 X1772062115_E07 FALSE #> X1772062109_F01 X1772062109_F01 FALSE #> X1772060226_G05 X1772060226_G05 FALSE #> X1772066108_D06 X1772066108_D06 FALSE #> X1772060224_F07 X1772060224_F07 TRUE #> X1772062111_F12 X1772062111_F12 TRUE #> X1772063078_G02 X1772063078_G02 TRUE #> X1772060240_H11 X1772060240_H11 TRUE #> X1772067094_C07 X1772067094_C07 TRUE #> X1772058177_A09 X1772058177_A09 TRUE #> X1772058171_C05 X1772058171_C05 TRUE #> X1772062128_B03 X1772062128_B03 TRUE #> X1772062118_F04 X1772062118_F04 TRUE #> X1772062109_E05 X1772062109_E05 TRUE #> X1772062128_D02 X1772062128_D02 TRUE #> X1772062109_E12 X1772062109_E12 TRUE #> X1772062113_E05 X1772062113_E05 TRUE #> X1772062128_F05 X1772062128_F05 TRUE #> X1772062118_D09 X1772062118_D09 TRUE