Run the single cell analysis app — singleCellTK • singleCellTK

Use this function to run the single cell analysis app.

singleCellTK(inSCE = NULL, includeVersion = TRUE, theme = "yeti")

Arguments

inSCE: The input SCtkExperiment class object
includeVersion: Include the version number in the SCTK header. The default is TRUE.
theme: The bootswatch theme to use for the singleCellTK UI. The default is 'flatly'.

Value

The shiny app will open

Examples

#Upload data through the app
if(interactive()){
  singleCellTK()
}

#Load the app with a SCtkExperiment object
if(interactive()){
  data("mouseBrainSubsetSCE")
  singleCellTK(mouseBrainSubsetSCE)
}