Use this function to run the single cell analysis app.

singleCellTK(inSCE = NULL, includeVersion = TRUE, theme = "yeti")

Arguments

inSCE

The input SCtkExperiment class object

includeVersion

Include the version number in the SCTK header. The default is TRUE.

theme

The bootswatch theme to use for the singleCellTK UI. The default is 'flatly'.

Value

The shiny app will open

Examples

#Upload data through the app if(interactive()){ singleCellTK() } #Load the app with a SCtkExperiment object if(interactive()){ data("mouseBrainSubsetSCE") singleCellTK(mouseBrainSubsetSCE) }