Creates a table of summary metrics from an input SCtkExperiment.

summarizeTable(inSCE, useAssay = "counts", expressionCutoff = 1700)

Arguments

inSCE

Input SCtkExperiment object. Required

useAssay

Indicate which assay to summarize. Default is "counts"

expressionCutoff

Count number of samples with fewer than expressionCutoff genes. The default is 1700.

Value

A data.frame object of summary metrics.

Examples

data("mouseBrainSubsetSCE") summarizeTable(mouseBrainSubsetSCE)
#> Metric Value #> 1 Number of Samples 30 #> 2 Number of Genes 19972 #> 3 Average number of reads per cell 8008 #> 4 Average number of genes per cell 2395 #> 5 Samples with <1700 detected genes 6 #> 6 Genes with no expression across all samples 7923